IL_5KCS_129

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_129 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1092

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5KCS|1|1a|G|450
5KCS|1|1a|A|451
5KCS|1|1a|A|452
5KCS|1|1a|G|453
5KCS|1|1a|G|454
5KCS|1|1a|G|455
*
5KCS|1|1a|C|477
5KCS|1|1a|A|478
5KCS|1|1a|U|479
5KCS|1|1a|U|480
5KCS|1|1a|G|481
5KCS|1|1a|A|482
5KCS|1|1a|C|483

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16