IL_5KCS_140
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGUAG*CGUAGAGAU
- Length
- 15 nucleotides
- Bulged bases
- 5KCS|1|1a|A|702
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_140 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.17
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5KCS|1|1a|G|683
5KCS|1|1a|U|684
5KCS|1|1a|G|685
5KCS|1|1a|U|686
5KCS|1|1a|A|687
5KCS|1|1a|G|688
*
5KCS|1|1a|C|699
5KCS|1|1a|G|700
5KCS|1|1a|U|701
5KCS|1|1a|A|702
5KCS|1|1a|G|703
5KCS|1|1a|A|704
5KCS|1|1a|G|705
5KCS|1|1a|A|706
5KCS|1|1a|U|707
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1k
- 30S ribosomal protein S11
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