IL_5KCS_145

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACGGG*UUGU

Length

9 nucleotides

Bulged bases

5KCS|1|1a|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_145 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.2923

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5KCS|1|1a|A|923
5KCS|1|1a|C|924
5KCS|1|1a|G|925
5KCS|1|1a|G|926
5KCS|1|1a|G|927
*
5KCS|1|1a|U|1390
5KCS|1|1a|U|1391
5KCS|1|1a|G|1392
5KCS|1|1a|U|1393

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1e

30S ribosomal protein S5

Chain 1v

mRNA