IL_5KCS_160

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

5KCS|1|1a|A|1257, 5KCS|1|1a|A|1280, 5KCS|1|1a|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_160 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2666

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5KCS|1|1a|G|1255
5KCS|1|1a|A|1256
5KCS|1|1a|A|1257
5KCS|1|1a|G|1258
*
5KCS|1|1a|C|1277
5KCS|1|1a|G|1278
5KCS|1|1a|G|1279
5KCS|1|1a|A|1280
5KCS|1|1a|C|1281
5KCS|1|1a|C|1282

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14