IL_5KCS_179

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_179 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1648

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KCS|1|1A|U|1851
5KCS|1|1A|U|1852
5KCS|1|1A|A|1853
5KCS|1|1A|A|1854
5KCS|1|1A|U|1855
5KCS|1|1A|U|1856
5KCS|1|1A|G|1857
5KCS|1|1A|A|1858
5KCS|1|1A|U|1859
5KCS|1|1A|G|1860
*
5KCS|1|1A|U|1882
5KCS|1|1A|U|1883
5KCS|1|1A|G|1884
5KCS|1|1A|A|1885
5KCS|1|1A|U|1886
5KCS|1|1A|C|1887
5KCS|1|1A|G|1888
5KCS|1|1A|A|1889
5KCS|1|1A|A|1890
5KCS|1|1A|G|1891

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains