IL_5KCS_181

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGCCU*AUGUUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_181 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.2983

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5KCS|1|1A|G|2100
5KCS|1|1A|A|2101
5KCS|1|1A|G|2102
5KCS|1|1A|C|2103
5KCS|1|1A|C|2104
5KCS|1|1A|U|2105
*
5KCS|1|1A|A|2184
5KCS|1|1A|U|2185
5KCS|1|1A|G|2186
5KCS|1|1A|U|2187
5KCS|1|1A|U|2188
5KCS|1|1A|U|2189

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains