IL_5KCS_185
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5KCS|1|1A|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_185 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.1679
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5KCS|1|1A|C|2636
5KCS|1|1A|U|2637
5KCS|1|1A|G|2638
5KCS|1|1A|A|2639
5KCS|1|1A|G|2640
*
5KCS|1|1A|C|2774
5KCS|1|1A|G|2775
5KCS|1|1A|A|2776
5KCS|1|1A|G|2777
5KCS|1|1A|A|2778
5KCS|1|1A|U|2779
5KCS|1|1A|G|2780
5KCS|1|1A|A|2781
5KCS|1|1A|G|2782
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
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