IL_5KCS_195

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACG*UGUAC

Length

9 nucleotides

Bulged bases

5KCS|1|1a|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_195 not in the Motif Atlas

Geometric match to IL_2O3Y_003

Geometric discrepancy: 0.3289

The information below is about IL_2O3Y_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

5KCS|1|1a|G|922
5KCS|1|1a|A|923
5KCS|1|1a|C|924
5KCS|1|1a|G|925
*
5KCS|1|1a|U|1391
5KCS|1|1a|G|1392
5KCS|1|1a|U|1393
5KCS|1|1a|A|1394
5KCS|1|1a|C|1395

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1e

30S ribosomal protein S5