IL_5KCS_214
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUGC*GAACUC
- Length
- 11 nucleotides
- Bulged bases
- 5KCS|1|1a|U|1126
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_214 not in the Motif Atlas
- Homologous match to IL_5J7L_051
- Geometric discrepancy: 0.1735
- The information below is about IL_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5KCS|1|1a|G|1124
5KCS|1|1a|U|1125
5KCS|1|1a|U|1126
5KCS|1|1a|G|1127
5KCS|1|1a|C|1128
*
5KCS|1|1a|G|1144
5KCS|1|1a|A|1145
5KCS|1|1a|A|1146
5KCS|1|1a|C|1147
5KCS|1|1a|U|1148
5KCS|1|1a|C|1149
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
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