IL_5KPS_020

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1111

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5KPS|1|27|U|409
5KPS|1|27|G|410
5KPS|1|27|A|411
5KPS|1|27|A|412
5KPS|1|27|G|413
5KPS|1|27|A|414
5KPS|1|27|A|415
5KPS|1|27|G|416
*
5KPS|1|27|U|427
5KPS|1|27|G|428
5KPS|1|27|U|429
5KPS|1|27|A|430
5KPS|1|27|A|431
5KPS|1|27|A|432
5KPS|1|27|G|433

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 9

30S ribosomal protein S4