IL_5KPS_022

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5KPS|1|27|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1137

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KPS|1|27|G|446
5KPS|1|27|G|447
5KPS|1|27|A|448
5KPS|1|27|G|449
5KPS|1|27|G|450
*
5KPS|1|27|C|483
5KPS|1|27|G|484
5KPS|1|27|U|485
5KPS|1|27|U|486
5KPS|1|27|A|487
5KPS|1|27|C|488

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 21

30S ribosomal protein S16

Chain 9

30S ribosomal protein S4