IL_5KPS_024

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_024 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.111

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

5KPS|1|27|C|504
5KPS|1|27|G|505
5KPS|1|27|G|506
5KPS|1|27|C|507
5KPS|1|27|U|508
5KPS|1|27|A|509
5KPS|1|27|A|510
5KPS|1|27|C|511
*
5KPS|1|27|G|540
5KPS|1|27|G|541

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S12

Chain 9

30S ribosomal protein S4