IL_5KPS_037

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_037 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1022

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5KPS|1|27|C|779
5KPS|1|27|A|780
5KPS|1|27|A|781
5KPS|1|27|A|782
5KPS|1|27|C|783
*
5KPS|1|27|G|799
5KPS|1|27|G|800
5KPS|1|27|U|801
5KPS|1|27|A|802
5KPS|1|27|G|803

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S11

Chain 26

30S ribosomal protein S21

Chain 28

Large subunit ribosomal RNA; LSU rRNA