IL_5KPS_076

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

5KPS|1|28|A|504, 5KPS|1|28|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_076 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.091

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

5KPS|1|28|G|481
5KPS|1|28|A|482
5KPS|1|28|A|483
5KPS|1|28|C|484
*
5KPS|1|28|G|496
5KPS|1|28|A|497
5KPS|1|28|G|498
5KPS|1|28|U|499
5KPS|1|28|G|500
5KPS|1|28|A|501
5KPS|1|28|A|502
5KPS|1|28|A|503
5KPS|1|28|A|504
5KPS|1|28|A|505
5KPS|1|28|G|506
5KPS|1|28|A|507
5KPS|1|28|A|508
5KPS|1|28|C|509

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24