IL_5KPS_086

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

5KPS|1|28|G|776, 5KPS|1|28|A|788, 5KPS|1|28|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_086 not in the Motif Atlas

Homologous match to IL_7A0S_021

Geometric discrepancy: 0.1393

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

5KPS|1|28|G|775
5KPS|1|28|G|776
5KPS|1|28|G|777
*
5KPS|1|28|C|787
5KPS|1|28|A|788
5KPS|1|28|A|789
5KPS|1|28|U|790
5KPS|1|28|C|791

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain B

50S ribosomal protein L2

Chain S

50S ribosomal protein L22