IL_5KPS_096

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

5KPS|1|28|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_096 not in the Motif Atlas

Homologous match to IL_7RQB_033

Geometric discrepancy: 0.3664

The information below is about IL_7RQB_033

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5KPS|1|28|G|880
5KPS|1|28|G|881
*
5KPS|1|28|U|895
5KPS|1|28|A|896
5KPS|1|28|C|897

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain A

GTP pyrophosphokinase