IL_5KPS_101

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5KPS|1|28|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_101 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1512

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5KPS|1|28|U|1018
5KPS|1|28|U|1019
5KPS|1|28|A|1020
5KPS|1|28|A|1021
5KPS|1|28|G|1022
5KPS|1|28|U|1023
5KPS|1|28|G|1024
*
5KPS|1|28|C|1140
5KPS|1|28|U|1141
5KPS|1|28|A|1142
5KPS|1|28|A|1143
5KPS|1|28|A|1144

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain F

50S ribosomal protein L6

Chain J

50S ribosomal protein L13