IL_5KPS_130

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5KPS|1|28|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_130 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0761

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5KPS|1|28|C|1686
5KPS|1|28|G|1687
5KPS|1|28|U|1688
5KPS|1|28|A|1689
5KPS|1|28|A|1690
5KPS|1|28|C|1691
*
5KPS|1|28|G|1696
5KPS|1|28|G|1697
5KPS|1|28|A|1698
5KPS|1|28|G|1699
5KPS|1|28|A|1700
5KPS|1|28|A|1701
5KPS|1|28|G|1702

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 27

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2