IL_5KPS_131

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5KPS|1|28|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_131 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1504

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KPS|1|28|U|1712
5KPS|1|28|A|1713
5KPS|1|28|U|1714
5KPS|1|28|G|1715
5KPS|1|28|U|1716
5KPS|1|28|A|1717
5KPS|1|28|G|1718
*
5KPS|1|28|U|1742
5KPS|1|28|G|1743
5KPS|1|28|A|1744
5KPS|1|28|A|1745
5KPS|1|28|A|1746

Current chains

Chain 28

23S ribosomal RNA

Nearby chains