IL_5KPS_139

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_139 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.161

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5KPS|1|28|U|1864
5KPS|1|28|U|1865
5KPS|1|28|A|1866
5KPS|1|28|G|1867
*
5KPS|1|28|C|1874
5KPS|1|28|G|1875
5KPS|1|28|A|1876
5KPS|1|28|A|1877
5KPS|1|28|G|1878

Current chains

Chain 28

23S ribosomal RNA

Nearby chains