IL_5KPS_157
3D structure
- PDB id
- 5KPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KPS_157 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.1104
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5KPS|1|28|C|2466
5KPS|1|28|C|2467
5KPS|1|28|A|2468
5KPS|1|28|A|2469
5KPS|1|28|G|2470
*
5KPS|1|28|C|2480
5KPS|1|28|G|2481
5KPS|1|28|A|2482
5KPS|1|28|C|2483
5KPS|1|28|G|2484
Current chains
- Chain 28
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain A
- GTP pyrophosphokinase
- Chain M
- 50S ribosomal protein L16
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