IL_5KPS_169

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_169 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.1119

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

5KPS|1|28|C|2806
5KPS|1|28|U|2807
5KPS|1|28|G|2808
5KPS|1|28|A|2809
5KPS|1|28|A|2810
5KPS|1|28|G|2811
*
5KPS|1|28|C|2889
5KPS|1|28|G|2890
5KPS|1|28|U|2891
5KPS|1|28|G|2892

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain C

50S ribosomal protein L3

Chain S

50S ribosomal protein L22