IL_5KPS_180

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

5KPS|1|28|U|846, 5KPS|1|28|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_180 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3346

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5KPS|1|28|A|844
5KPS|1|28|A|845
5KPS|1|28|U|846
5KPS|1|28|U|847
5KPS|1|28|C|848
*
5KPS|1|28|G|930
5KPS|1|28|U|931
5KPS|1|28|U|932
5KPS|1|28|A|933
5KPS|1|28|U|934

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30