IL_5KPS_183

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUGUGUAGGAUAGG*CCCUUUA

Length

23 nucleotides

Bulged bases

5KPS|1|28|U|2111, 5KPS|1|28|G|2115, 5KPS|1|28|U|2118, 5KPS|1|28|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPS|1|28|U|2106
5KPS|1|28|G|2107
5KPS|1|28|A|2108
5KPS|1|28|U|2109
5KPS|1|28|G|2110
5KPS|1|28|U|2111
5KPS|1|28|G|2112
5KPS|1|28|U|2113
5KPS|1|28|A|2114
5KPS|1|28|G|2115
5KPS|1|28|G|2116
5KPS|1|28|A|2117
5KPS|1|28|U|2118
5KPS|1|28|A|2119
5KPS|1|28|G|2120
5KPS|1|28|G|2121
*
5KPS|1|28|C|2177
5KPS|1|28|C|2178
5KPS|1|28|C|2179
5KPS|1|28|U|2180
5KPS|1|28|U|2181
5KPS|1|28|U|2182
5KPS|1|28|A|2183

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 32

Transfer RNA; tRNA