IL_5KPS_185

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

5KPS|1|28|A|2126, 5KPS|1|28|U|2130, 5KPS|1|28|U|2132, 5KPS|1|28|G|2133, 5KPS|1|28|U|2155, 5KPS|1|28|C|2164, 5KPS|1|28|A|2171, 5KPS|1|28|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPS|1|28|G|2124
5KPS|1|28|G|2125
5KPS|1|28|A|2126
5KPS|1|28|G|2127
5KPS|1|28|G|2128
5KPS|1|28|C|2129
5KPS|1|28|U|2130
5KPS|1|28|U|2131
5KPS|1|28|U|2132
5KPS|1|28|G|2133
5KPS|1|28|A|2134
5KPS|1|28|A|2135
5KPS|1|28|G|2136
5KPS|1|28|U|2137
*
5KPS|1|28|A|2154
5KPS|1|28|U|2155
5KPS|1|28|G|2156
5KPS|1|28|G|2157
5KPS|1|28|A|2158
5KPS|1|28|G|2159
5KPS|1|28|C|2160
5KPS|1|28|C|2161
5KPS|1|28|G|2162
5KPS|1|28|A|2163
5KPS|1|28|C|2164
5KPS|1|28|C|2165
5KPS|1|28|U|2166
5KPS|1|28|U|2167
5KPS|1|28|G|2168
5KPS|1|28|A|2169
5KPS|1|28|A|2170
5KPS|1|28|A|2171
5KPS|1|28|U|2172
5KPS|1|28|A|2173
5KPS|1|28|C|2174

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 32

Transfer RNA; tRNA