IL_5KPS_186

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGA*UCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_186 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2387

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5KPS|1|28|U|2139
5KPS|1|28|G|2140
5KPS|1|28|G|2141
5KPS|1|28|A|2142
*
5KPS|1|28|U|2149
5KPS|1|28|C|2150
5KPS|1|28|U|2151
5KPS|1|28|G|2152

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S11