IL_5KPS_187

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_187 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3279

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5KPS|1|28|C|274
5KPS|1|28|C|275
5KPS|1|28|U|276
5KPS|1|28|G|277
5KPS|1|28|A|278
5KPS|1|28|A|279
5KPS|1|28|U|280
5KPS|1|28|C|281
*
5KPS|1|28|G|359
5KPS|1|28|U|360
5KPS|1|28|G|361
5KPS|1|28|A|362
5KPS|1|28|G|363

Current chains

Chain 28

23S ribosomal RNA

Nearby chains