IL_5KPV_023

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1145

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5KPV|1|26|G|450
5KPV|1|26|A|451
5KPV|1|26|A|452
5KPV|1|26|G|453
5KPV|1|26|G|454
5KPV|1|26|G|455
*
5KPV|1|26|C|477
5KPV|1|26|A|478
5KPV|1|26|U|479
5KPV|1|26|U|480
5KPV|1|26|G|481
5KPV|1|26|A|482
5KPV|1|26|C|483

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S16