IL_5KPV_056

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_056 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1365

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5KPV|1|26|C|1303
5KPV|1|26|G|1304
5KPV|1|26|G|1305
5KPV|1|26|A|1306
5KPV|1|26|U|1307
5KPV|1|26|U|1308
*
5KPV|1|26|A|1329
5KPV|1|26|U|1330
5KPV|1|26|G|1331
5KPV|1|26|A|1332
5KPV|1|26|A|1333
5KPV|1|26|G|1334

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S13