IL_5KPV_072

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_072 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1012

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5KPV|1|27|C|239
5KPV|1|27|C|240
5KPV|1|27|A|241
5KPV|1|27|G|242
5KPV|1|27|U|243
5KPV|1|27|A|244
5KPV|1|27|G|245
*
5KPV|1|27|C|253
5KPV|1|27|G|254
5KPV|1|27|A|255
5KPV|1|27|A|256
5KPV|1|27|C|257
5KPV|1|27|G|258

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L35

Chain K

50S ribosomal protein L15