IL_5KPV_081

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5KPV|1|27|G|801, 5KPV|1|27|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_081 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1341

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5KPV|1|27|G|674
5KPV|1|27|A|675
5KPV|1|27|A|676
5KPV|1|27|A|677
5KPV|1|27|C|678
*
5KPV|1|27|G|799
5KPV|1|27|A|800
5KPV|1|27|G|801
5KPV|1|27|A|802
5KPV|1|27|U|803
5KPV|1|27|A|804
5KPV|1|27|G|805
5KPV|1|27|C|806

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain K

50S ribosomal protein L15