IL_5KPV_084

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_084 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.1224

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5KPV|1|27|U|703
5KPV|1|27|G|704
5KPV|1|27|A|705
5KPV|1|27|A|706
5KPV|1|27|G|707
*
5KPV|1|27|U|724
5KPV|1|27|G|725
5KPV|1|27|G|726
5KPV|1|27|A|727
5KPV|1|27|G|728

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2