IL_5KPV_089

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

5KPV|1|27|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_089 not in the Motif Atlas

Homologous match to IL_5J7L_268

Geometric discrepancy: 0.121

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

5KPV|1|27|U|847
5KPV|1|27|C|848
*
5KPV|1|27|G|930
5KPV|1|27|U|931
5KPV|1|27|U|932
5KPV|1|27|A|933

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L30