IL_5KPV_096

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

5KPV|1|27|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_096 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.2952

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5KPV|1|27|G|880
5KPV|1|27|G|881
5KPV|1|27|G|882
*
5KPV|1|27|U|894
5KPV|1|27|U|895
5KPV|1|27|A|896
5KPV|1|27|C|897

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 33

GTP pyrophosphokinase