IL_5KPV_110

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5KPV|1|27|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_110 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1039

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5KPV|1|27|C|1208
5KPV|1|27|U|1209
5KPV|1|27|G|1210
5KPV|1|27|C|1211
5KPV|1|27|G|1212
5KPV|1|27|A|1213
5KPV|1|27|A|1214
5KPV|1|27|G|1215
*
5KPV|1|27|U|1234
5KPV|1|27|G|1235
5KPV|1|27|G|1236
5KPV|1|27|A|1237
5KPV|1|27|G|1238

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20