IL_5KPV_132

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_132 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1352

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5KPV|1|27|U|1720
5KPV|1|27|G|1721
5KPV|1|27|A|1722
5KPV|1|27|G|1723
5KPV|1|27|G|1724
*
5KPV|1|27|U|1736
5KPV|1|27|G|1737
5KPV|1|27|G|1738
5KPV|1|27|A|1739
5KPV|1|27|G|1740

Current chains

Chain 27

23S ribosomal RNA

Nearby chains