IL_5KPV_185

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_185 not in the Motif Atlas

Homologous match to IL_7A0S_109

Geometric discrepancy: 0.1046

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

5KPV|1|27|G|1666
5KPV|1|27|G|1667
5KPV|1|27|A|1668
5KPV|1|27|A|1669
5KPV|1|27|C|1670
5KPV|1|27|U|1671
5KPV|1|27|A|1672
5KPV|1|27|G|1673
5KPV|1|27|G|1674
*
5KPV|1|27|C|1990
5KPV|1|27|U|1991
5KPV|1|27|G|1992
5KPV|1|27|U|1993
5KPV|1|27|C|1994

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain J

50S ribosomal protein L14