IL_5KPV_186

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_186 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1178

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KPV|1|27|U|1851
5KPV|1|27|U|1852
5KPV|1|27|A|1853
5KPV|1|27|A|1854
5KPV|1|27|U|1855
5KPV|1|27|U|1856
5KPV|1|27|G|1857
5KPV|1|27|A|1858
5KPV|1|27|U|1859
5KPV|1|27|G|1860
*
5KPV|1|27|U|1882
5KPV|1|27|U|1883
5KPV|1|27|G|1884
5KPV|1|27|A|1885
5KPV|1|27|U|1886
5KPV|1|27|C|1887
5KPV|1|27|G|1888
5KPV|1|27|A|1889
5KPV|1|27|A|1890
5KPV|1|27|G|1891

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 32

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2