IL_5KPW_012

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5KPW|1|26|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1287

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5KPW|1|26|G|147
5KPW|1|26|G|148
5KPW|1|26|A|149
5KPW|1|26|U|150
5KPW|1|26|A|151
5KPW|1|26|A|152
5KPW|1|26|C|153
*
5KPW|1|26|G|168
5KPW|1|26|C|169
5KPW|1|26|U|170
5KPW|1|26|A|171
5KPW|1|26|A|172
5KPW|1|26|U|173
5KPW|1|26|A|174
5KPW|1|26|C|175

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 24

30S ribosomal protein S20