IL_5KPW_014

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

5KPW|1|26|U|244, 5KPW|1|26|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1203

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5KPW|1|26|G|242
5KPW|1|26|A|243
5KPW|1|26|U|244
5KPW|1|26|U|245
5KPW|1|26|A|246
5KPW|1|26|G|247
*
5KPW|1|26|C|277
5KPW|1|26|G|278
5KPW|1|26|A|279
5KPW|1|26|C|280
5KPW|1|26|G|281
5KPW|1|26|A|282
5KPW|1|26|U|283
5KPW|1|26|C|284

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 21

30S ribosomal protein S17