IL_5KPW_038

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1143

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5KPW|1|26|G|887
5KPW|1|26|G|888
5KPW|1|26|A|889
5KPW|1|26|G|890
5KPW|1|26|U|891
5KPW|1|26|A|892
5KPW|1|26|C|893
5KPW|1|26|G|894
*
5KPW|1|26|U|905
5KPW|1|26|A|906
5KPW|1|26|A|907
5KPW|1|26|A|908
5KPW|1|26|A|909
5KPW|1|26|C|910

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 27

Large subunit ribosomal RNA; LSU rRNA