IL_5KPW_057

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_057 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1216

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5KPW|1|26|C|1303
5KPW|1|26|G|1304
5KPW|1|26|G|1305
5KPW|1|26|A|1306
5KPW|1|26|U|1307
5KPW|1|26|U|1308
*
5KPW|1|26|A|1329
5KPW|1|26|U|1330
5KPW|1|26|G|1331
5KPW|1|26|A|1332
5KPW|1|26|A|1333
5KPW|1|26|G|1334

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S13