IL_5KPW_058

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5KPW|1|26|C|1400, 5KPW|1|26|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_058 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1338

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5KPW|1|26|C|1399
5KPW|1|26|C|1400
5KPW|1|26|G|1401
*
5KPW|1|26|C|1501
5KPW|1|26|A|1502
5KPW|1|26|A|1503
5KPW|1|26|G|1504

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 29

mRNA

Chain 31

Transfer RNA; tRNA