IL_5KPW_082

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5KPW|1|27|G|801, 5KPW|1|27|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_082 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1046

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5KPW|1|27|G|674
5KPW|1|27|A|675
5KPW|1|27|A|676
5KPW|1|27|A|677
5KPW|1|27|C|678
*
5KPW|1|27|G|799
5KPW|1|27|A|800
5KPW|1|27|G|801
5KPW|1|27|A|802
5KPW|1|27|U|803
5KPW|1|27|A|804
5KPW|1|27|G|805
5KPW|1|27|C|806

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain K

50S ribosomal protein L15