IL_5KPW_092
3D structure
- PDB id
- 5KPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KPW_092 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.1104
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5KPW|1|27|G|856
5KPW|1|27|G|857
5KPW|1|27|G|858
5KPW|1|27|G|859
5KPW|1|27|U|860
5KPW|1|27|A|861
5KPW|1|27|G|862
*
5KPW|1|27|C|915
5KPW|1|27|G|916
5KPW|1|27|A|917
5KPW|1|27|A|918
5KPW|1|27|U|919
5KPW|1|27|A|920
5KPW|1|27|C|921
Current chains
- Chain 27
- 23S ribosomal RNA
Nearby chains
- Chain 28
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L30
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