IL_5KPW_105

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_105 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1766

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5KPW|1|27|G|1038
5KPW|1|27|A|1039
5KPW|1|27|A|1040
5KPW|1|27|G|1041
*
5KPW|1|27|C|1114
5KPW|1|27|G|1115
5KPW|1|27|G|1116
5KPW|1|27|C|1117

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain L

50S ribosomal protein L16

Chain U

50S ribosomal protein L25