IL_5KPW_107

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

5KPW|1|27|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_107 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.267

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

5KPW|1|27|G|1059
5KPW|1|27|U|1060
5KPW|1|27|U|1061
5KPW|1|27|G|1062
*
5KPW|1|27|C|1076
5KPW|1|27|A|1077
5KPW|1|27|U|1078
5KPW|1|27|C|1079

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L10

Chain H

50S ribosomal protein L11