IL_5KPW_119

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

5KPW|1|27|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_119 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1453

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5KPW|1|27|G|1432
5KPW|1|27|A|1433
5KPW|1|27|A|1434
5KPW|1|27|G|1435
*
5KPW|1|27|C|1557
5KPW|1|27|C|1558
5KPW|1|27|U|1559
5KPW|1|27|G|1560
5KPW|1|27|C|1561

Current chains

Chain 27

23S ribosomal RNA

Nearby chains