IL_5KPW_130

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

5KPW|1|27|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_130 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.0909

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5KPW|1|27|A|1669
5KPW|1|27|C|1670
5KPW|1|27|U|1671
5KPW|1|27|A|1672
5KPW|1|27|G|1673
5KPW|1|27|G|1674
*
5KPW|1|27|C|1990
5KPW|1|27|U|1991
5KPW|1|27|G|1992
5KPW|1|27|U|1993

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain J

50S ribosomal protein L14