IL_5KPW_141

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5KPW|1|27|A|1938, 5KPW|1|27|U|1944, 5KPW|1|27|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_141 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1614

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

5KPW|1|27|C|1934
5KPW|1|27|G|1935
5KPW|1|27|A|1936
5KPW|1|27|A|1937
5KPW|1|27|A|1938
5KPW|1|27|U|1939
5KPW|1|27|U|1940
5KPW|1|27|C|1941
5KPW|1|27|C|1942
5KPW|1|27|U|1943
5KPW|1|27|U|1944
5KPW|1|27|G|1945
*
5KPW|1|27|C|1961
5KPW|1|27|C|1962
5KPW|1|27|U|1963
5KPW|1|27|G|1964

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2